COMPLIANCE · 3 min read ·

VAT for UK Shopify stores: registration, tax settings, zero-rated products and MTD

When a UK Shopify store must register for VAT, how to set it up, how to treat zero-rated products and delivery, and what Making Tax Digital needs.

Shopindev Team

VAT rarely stops a Shopify launch. It shows up later — as a registration that came three months late, a zero-rated range charged at 20% or a return that does not reconcile with the store. This is the practical setup for a UK store selling to consumers. It is not tax advice; your accountant decides the treatment, and we make the store match it.

When you must register

  • Your taxable turnover in the last twelve months passed £90,000 — the test is a rolling twelve months, not the tax year.
  • You expect turnover in the next 30 days alone to pass £90,000.
  • Below the threshold you can register voluntarily, which lets you reclaim VAT on costs but adds 20% to consumer prices or comes out of your margin.

Setting it up in Shopify

  1. Under Settings → Taxes and duties → United Kingdom, enter your VAT registration number so Shopify collects VAT.
  2. Show prices including VAT. UK consumers must see the full price, and since 6 April 2025 drip pricing — adding unavoidable charges late in checkout — is banned.
  3. Assign product categories so Shopify can apply the right rate, and use tax overrides where a collection needs a different one.
  4. Check how delivery charges are taxed: they generally follow the goods, and mixed baskets of standard- and zero-rated items need a rule your accountant agrees with.
  5. Place test orders with a standard-rated item, a zero-rated item and a mixed basket, and compare the VAT line with what you expect.

Zero-rated and reduced-rate products

The standard rate is 20%, the reduced rate 5%, and some goods are zero-rated — children's clothing and books are the usual examples in ecommerce. Zero-rated is not the same as exempt: the sale is still taxable at 0% and still goes on your return. The common Shopify mistake is a single store-wide setting that charges 20% on everything because nobody configured the exceptions.

Making Tax Digital and records

VAT-registered businesses must keep digital records and file returns through software that works with Making Tax Digital. Shopify's tax reports are useful for checking, but they are not your VAT record. Connect the store to accounting software such as Xero or QuickBooks through an app, map payouts, fees and refunds properly, and reconcile monthly rather than at the end of the quarter.

VAT invoices

Business customers will ask for a VAT invoice with your VAT number, the rate and the VAT amount. Shopify does not produce one by default; an order-printer template or an invoicing app does, and it should use the same rates as checkout.

Selling abroad, and selling into the UK

  • Selling into the EU from the UK: use IOSS for consignments up to €150 and DDP above it — covered in Shopify Markets for UK brands selling into the EU.
  • Selling to the US: there is no de minimis exemption any more — see selling to the US from the UK.
  • Selling into the UK from abroad: for consignments up to £135, the overseas seller charges UK VAT at checkout and needs a UK VAT registration.

The wider rule set — cancellation rights, pricing, reviews and cookies — is in selling online in the UK. We configure tax settings and the accounting connection as part of Shopify store setup.

This article is part of Compliance, tax and consent — every article on that subject, with the questions it answers, on one page.

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FAQ

Questions on this topic

When does a UK Shopify store need to register for VAT?

When taxable turnover passes £90,000 in a rolling twelve months, or when you expect to pass it in the next 30 days alone.

Where do I add my VAT number in Shopify?

Under Settings → Taxes and duties → United Kingdom. Shopify then collects VAT at checkout based on your tax settings.

How do I charge 0% VAT on some products in Shopify?

Assign the correct product categories and use tax overrides for collections that need a different rate, then test a mixed basket before going live.

Is Shopify enough for Making Tax Digital?

No. Making Tax Digital needs digital records and returns filed through compatible accounting software. Connect Shopify to it and reconcile monthly.